# Everything following the pound sign is a comment and # is ignored by the program when this data file is read in. # ------------------------------------------------------ # # General parameters for drawing the plasmid map # # ------------------------------------------------------ # output path # you can set this explicitly to something like /Users/tito/Desktop/PlasMap/ # or set it to TO_DESKTOP to just save the output files to your desktop TO_DESKTOP # output file name (name stem) # you can set this to a specific name # or set it to USE_INPUT_FILENAME USE_INPUT_FILENAME # outer radius (in pixels) 100 # inner radius (in pixels) 80 # segment label offset, inner radius (multiple of outer radius, above) 1.10 # segment label offset, outer radius (multiple of outer radius, above) 1.50 # image margins (in pixels) 100 # line color (in RGB: three values between 0 and 1; 0 = black, 1 = white) 0.22 0.22 0.22 # line thickness (in pixels) 0.25 # label (text) color (in RGB) 0 0 0 # font name Helvetica # font size (in pixels) 12 # segment color 1 (in RGB) 0.75 0.75 0.75 # segment color 2 (in RGB) 0.2 0.8 0.8 # segment color 3 (in RGB) 0.6 0.8 0.0 # segment color 4 (in RGB) 1.0 0.8 0.0 # segment colors 5-10 (in RGB) 1.0 0.6 0.8 1.0 1.0 0.6 0.8 1.0 0.8 0.8 1.0 1.0 0.6 0.8 1.0 0.8 0.6 1.0 # ------------------------------------------------------ # # Segment data # (# of wedges in segment, segment color, segment label) # # ------------------------------------------------------ 4,1 6,2,Bam HI 4,1 6,3,Xma I 1,1 6,1 6,4,Eco RI 9,1 6,2,Hin dIII 4,1 11,1 6,3,Eco RI 4,1 2,1 4,4,Hpa II 8,1 3,2,TET 4,1 5,1 4,3,OREP 12,1 6,1 4,4,AMP 11,1 7,1 9,2,KANA 4,3,Hpa II 1,1 11,1 6,4,Hin dIII 4,1 2,1 42,5,coding 4,1 6,2,Eco RI 3,1 6,3,Hin dIII 2,1 6,4,Xma I 7,1